EXPANDED ANNOTATION COVERAGE

The methods described to compensate for the incomplete annotation cov­erage of Chlamydomonas reinhardtii genes resulted in the addition of a vast number of unique annotations to the genome. While there is a strong overlap between pre-existing annotations and those assigned by inference, many new terms have also been added. The annotations derived by orthology,

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however, are not mixed with the annotations attained directly to decrease the possibility of false positive associations of functional terms that may distort the analysis, and to permit a comparison with the functional terms derived directly from the Chlamydomonas annotation.

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